EnhancerDB
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  3. rs12978872[chr19:2526488]
Enhancers that have rs12978872[chr19:2526488]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2521384 2555115 enh4959
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12978872[chr19:2526488]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2526481 2526493 FOXI1 JASPAR yes 112069245
chr19 2526482 2526494 FOXC2 JASPAR yes 112069246
chr19 2526483 2526494 FOXC1 JASPAR yes 112069247
chr19 2526484 2526488 YY1 TRANSFAC yes 112069248
chr19 2526484 2526499 FOXA1 JASPAR yes 112069249
chr19 2526485 2526500 FOXP1 JASPAR yes 112069250
chr19 2526486 2526495 SRY JASPAR yes 112069251
chr19 2526486 2526497 FOXP2 JASPAR yes 112069252
chr19 2526486 2526498 FOXC2 JASPAR yes 112069253
chr19 2526486 2526500 FOXF2 JASPAR yes 112069254
chr19 2526487 2526495 FOXD1 JASPAR yes 112069255
chr19 2526487 2526495 FOXG1 JASPAR yes 112069256
chr19 2526487 2526495 FOXO3 JASPAR yes 112069257
chr19 2526487 2526498 FOXB1 JASPAR yes 112069258
chr19 2526487 2526498 FOXC1 JASPAR yes 112069259
chr19 2526488 2526495 FOXD2 JASPAR yes 112069260
chr19 2526488 2526495 FOXI1 JASPAR yes 112069261
chr19 2526488 2526495 FOXL1 JASPAR yes 112069262
chr19 2526488 2526495 FOXO4 JASPAR yes 112069263
chr19 2526488 2526495 FOXO6 JASPAR yes 112069264
chr19 2526488 2526495 FOXP3 JASPAR yes 112069265
chr19 2526488 2526499 FOXA1 JASPAR yes 112069266
Genes associated with rs12978872[chr19:2526488], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More