EnhancerDB
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  3. rs12988920[chr2:188405642]
Enhancers that have rs12988920[chr2:188405642]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 188402465 188418715 enh19074
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Lung (PC-9) Esophagus Liver Bone (Osteoblast) Muscle (A673) Placenta Colon (HCT116) Uterus Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Stomach
Transcript factors that have rs12988920[chr2:188405642]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 188405623 188405644 IRF1 JASPAR yes 79518158
chr2 188405624 188405645 IRF1 JASPAR yes 79518160
chr2 188405625 188405646 IRF1 JASPAR yes 79518161
chr2 188405629 188405644 FOXP1 JASPAR yes 79518162
chr2 188405629 188405650 IRF1 JASPAR yes 79518163
chr2 188405630 188405651 IRF1 JASPAR yes 79518164
chr2 188405631 188405646 FOXP1 JASPAR yes 79518165
chr2 188405631 188405646 LEF1 JASPAR yes 79518166
chr2 188405631 188405652 IRF1 JASPAR yes 79518167
chr2 188405632 188405653 IRF1 JASPAR yes 79518168
chr2 188405635 188405656 IRF1 JASPAR yes 79518169
chr2 188405636 188405651 FOXP1 JASPAR yes 79518170
chr2 188405637 188405658 IRF1 JASPAR yes 79518171
chr2 188405638 188405653 FOXP1 JASPAR yes 79518172
chr2 188405641 188405662 IRF1 JASPAR yes 79518173
Genes associated with rs12988920[chr2:188405642], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More