EnhancerDB
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  3. rs12993539[chr2:228272342]
Enhancers that have rs12993539[chr2:228272342]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 228254625 228287055 enh19284
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12993539[chr2:228272342]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 228272331 228272342 NFE2 JASPAR yes 81519867
chr2 228272334 228272348 ZIC1 JASPAR yes 81519868
chr2 228272334 228272349 ZIC3 JASPAR yes 81519869
chr2 228272334 228272349 ZIC4 JASPAR yes 81519870
Genes associated with rs12993539[chr2:228272342], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More