EnhancerDB
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  3. rs13028787[chr2:28941262]
Enhancers that have rs13028787[chr2:28941262]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 28928585 28946675 enh18396
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Kidney Epithelial (MCF-7) Skin (Keratinocyte) Stomach Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs13028787[chr2:28941262]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 28941253 28941263 SP1 JASPAR yes 72673306
chr2 28941253 28941272 PAX5 JASPAR yes 72673307
Genes associated with rs13028787[chr2:28941262], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr2 28974506 29025806 + PPP1CB ENSG00000213639.5 28974506 33244 Esophagus 5.53269e-12 2242