EnhancerDB
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  3. rs138797620[chr12:116928717]
Enhancers that have rs138797620[chr12:116928717]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 116926365 116948935 enh43835
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Lung (PC-9) Esophagus Bone (Osteoblast) Stomach Colon (HCT116) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Epithelial (MCF-7)
chr12 116928717 116928987 vista15031
VISTA
Transcript factors that have rs138797620[chr12:116928717]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 116928351 116928854 SOX2 GTRD no Neural Stem Cells (H9) 108061673
chr12 116928462 116928940 SOX2 GTRD no Neural Stem Cells (H9) 108061674
chr12 116928485 116928905 SOX2 GTRD no Neural Stem Cells (H9) 108061675
chr12 116928535 116928841 SOX2 GTRD no Neural Stem Cells (H9) 108061676
chr12 116928705 116928719 SPI1 JASPAR yes 82483681
chr12 116928705 116928719 SPI1 JASPAR yes 124001825
Genes associated with rs138797620[chr12:116928717], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More