EnhancerDB
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  3. rs139055387[chr1:21662927]
Enhancers that have rs139055387[chr1:21662927]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 21624465 21668955 enh110
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs139055387[chr1:21662927]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 21662916 21662929 SMAD2 JASPAR yes 27298004
chr1 21662919 21662929 TBR1 JASPAR yes 27298005
chr1 21662920 21662930 TBX21 JASPAR yes 27298006
chr1 21662920 21664371 TCF7L2 GTRD no Colon (HCT116) 107802355
chr1 21662921 21662929 MGA JASPAR yes 27298007
chr1 21662921 21662929 TBX15 JASPAR yes 27298008
chr1 21662921 21662929 TBX1 JASPAR yes 27298009
chr1 21662921 21662929 TBX4 JASPAR yes 27298010
chr1 21662921 21662929 TBX5 JASPAR yes 27298011
chr1 21662921 21662930 ZEB1 JASPAR yes 27298012
chr1 21662921 21662933 PKNOX1 JASPAR yes 27298013
chr1 21662921 21662933 TGIF1 JASPAR yes 27298014
chr1 21662921 21662934 ZBTB18 JASPAR yes 27298015
chr1 21662922 21662932 FIGLA JASPAR yes 27298016
chr1 21662922 21662932 ID4 JASPAR yes 27298017
chr1 21662922 21662932 TCF3 JASPAR yes 27298018
chr1 21662922 21662932 TCF4 JASPAR yes 27298019
chr1 21662923 21662932 SNAI2 JASPAR yes 27298020
chr1 21662924 21662929 USF2 TRANSFAC yes 27298021
Genes associated with rs139055387[chr1:21662927], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More