EnhancerDB
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  3. rs139166009[chr12:50907258]
Enhancers that have rs139166009[chr12:50907258]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 50906745 50954311 enh2346
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs139166009[chr12:50907258]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 50907257 50907269 BHLHE23 JASPAR yes 120836208
chr12 50907258 50907268 BHLHE22 JASPAR yes 120836209
chr12 50907258 50907268 NEUROD2 JASPAR yes 120836210
chr12 50907258 50907268 OLIG1 JASPAR yes 120836211
chr12 50907258 50907268 OLIG2 JASPAR yes 120836212
chr12 50907258 50907268 OLIG3 JASPAR yes 120836213
Genes associated with rs139166009[chr12:50907258], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr12 51674822 51718452 - BIN2 ENSG00000110934.6 51718452 767564 Breast 0.181711 12066
chr12 49976668 49999422 - FAM186B ENSG00000135436.4 49999422 907836 Stomach 0.377733 12034