EnhancerDB
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  3. rs139170411[chr1:223902673]
Enhancers that have rs139170411[chr1:223902673]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 223886085 223931782 enh12712
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs139170411[chr1:223902673]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 223902528 223903104 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21383862
chr1 223902528 223903104 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107873042
chr1 223902588 223903301 ZNF263 UCSC Txn Factor no Conserved 107873043
chr1 223902666 223902676 HOXC10 JASPAR yes 35671518
chr1 223902666 223902676 HOXD11 JASPAR yes 35671519
chr1 223902666 223902677 HOXC11 JASPAR yes 35671520
chr1 223902666 223902677 HOXC12 JASPAR yes 35671521
chr1 223902666 223902677 HOXC13 JASPAR yes 35671522
chr1 223902666 223902677 HOXD12 JASPAR yes 35671523
Genes associated with rs139170411[chr1:223902673], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More