EnhancerDB
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  3. rs139348605[chr1:204049336]
Enhancers that have rs139348605[chr1:204049336]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204045525 204080675 enh12573
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs139348605[chr1:204049336]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204049175 204049691 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370074
chr1 204049175 204049691 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107859539
chr1 204049185 204049855 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21370075
chr1 204049185 204049855 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107859540
chr1 204049211 204049871 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370076
chr1 204049211 204049871 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107859541
chr1 204049316 204049806 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21370077
chr1 204049316 204049806 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107859542
chr1 204049323 204049647 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21370078
chr1 204049323 204049647 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107859543
chr1 204049329 204049859 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370079
chr1 204049329 204049859 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107859544
chr1 204049336 204049351 NR2C2 JASPAR yes 34676951
Genes associated with rs139348605[chr1:204049336], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More