EnhancerDB
  1. Home
  2. SNP
  3. rs139353947[chr12:52598952]
Enhancers that have rs139353947[chr12:52598952]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52591245 52620175 enh14727
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs139353947[chr12:52598952]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52598695 52599356 TCF7L2 GTRD no Colon (HCT116) 21546658
chr12 52598816 52599200 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546659
chr12 52598867 52599057 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546660
chr12 52598952 52598961 TFAP2A TRANSFAC yes 120927663
Genes associated with rs139353947[chr12:52598952], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More