EnhancerDB
  1. Home
  2. SNP
  3. rs139642504[chr1:201425248]
Enhancers that have rs139642504[chr1:201425248]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs139642504[chr1:201425248]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201424822 201425295 CTCF UCSC Txn Factor no Conserved 107856179
chr1 201425045 201425295 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107856188
chr1 201425231 201425252 IRF1 JASPAR yes 34495503
chr1 201425233 201425254 IRF1 JASPAR yes 34495504
chr1 201425234 201425249 FOXP1 JASPAR yes 34495506
chr1 201425236 201425251 FOXP1 JASPAR yes 34495507
chr1 201425236 201425257 IRF1 JASPAR yes 34495508
chr1 201425237 201425258 IRF1 JASPAR yes 34495509
chr1 201425238 201425253 FOXP1 JASPAR yes 34495510
chr1 201425238 201425259 IRF1 JASPAR yes 34495511
chr1 201425239 201425254 FOXP1 JASPAR yes 34495512
chr1 201425240 201425255 FOXP1 JASPAR yes 34495513
chr1 201425241 201425256 FOXP1 JASPAR yes 34495514
chr1 201425242 201425257 FOXP1 JASPAR yes 34495515
chr1 201425242 201425263 IRF1 JASPAR yes 34495516
chr1 201425243 201425258 FOXP1 JASPAR yes 34495517
chr1 201425243 201425264 IRF1 JASPAR yes 34495518
chr1 201425244 201425259 FOXP1 JASPAR yes 34495519
chr1 201425244 201425265 IRF1 JASPAR yes 34495520
Genes associated with rs139642504[chr1:201425248], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More