EnhancerDB
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  3. rs139771314[chr1:209583084]
Enhancers that have rs139771314[chr1:209583084]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs139771314[chr1:209583084]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209582985 209583397 ZNF143 GTRD no Epithelial (MCF-7) 21375282
chr1 209583036 209583540 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21375283
chr1 209583038 209583578 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21375284
chr1 209583043 209583527 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21375285
chr1 209583049 209583533 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21375286
chr1 209583066 209583602 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21375287
chr1 209583084 209583100 SOX4 JASPAR yes 34972834
Genes associated with rs139771314[chr1:209583084], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More