EnhancerDB
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  3. rs139859877[chr6:12359499]
Enhancers that have rs139859877[chr6:12359499]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 12340945 12361575 enh38802
Astrocyte Colon (HCT116) Pancreas Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
chr6 12359398 12359540 vista50908
VISTA
Transcript factors that have rs139859877[chr6:12359499]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 12359480 12359501 IRF1 JASPAR yes 70313578
chr6 12359480 12359501 IRF1 JASPAR yes 99965864
chr6 12359484 12359499 IRF9 JASPAR yes 70313585
chr6 12359484 12359499 IRF9 JASPAR yes 99965871
chr6 12359486 12359507 IRF1 JASPAR yes 70313586
chr6 12359486 12359507 IRF1 JASPAR yes 99965872
chr6 12359488 12359503 PRDM1 JASPAR yes 70313587
chr6 12359488 12359503 STAT2 JASPAR yes 70313588
chr6 12359488 12359503 PRDM1 JASPAR yes 99965873
chr6 12359488 12359503 STAT2 JASPAR yes 99965874
chr6 12359489 12359503 STAT1 JASPAR yes 70313589
chr6 12359489 12359503 STAT1 JASPAR yes 99965875
Genes associated with rs139859877[chr6:12359499], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More