EnhancerDB
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  3. rs139955331[chr12:54749567]
Enhancers that have rs139955331[chr12:54749567]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 54746942 54756928 enh2378
Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Uterus Blood (Karpas-422) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Stomach
chr12 54749329 54749578 vista13574
VISTA
Transcript factors that have rs139955331[chr12:54749567]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 54748612 54749965 ZBTB33 GTRD no Lung (A549) 108037391
chr12 54748650 54750040 ZBTB33 GTRD no Lung (A549) 108037392
chr12 54748785 54750079 ZNF274 GTRD no Blood (GM12878) 108037393
chr12 54748872 54749912 ZNF143 GTRD no Epithelial (MCF-7) 108037394
chr12 54748907 54749775 ZNF274 GTRD no Bone Marrow (K562) 108037395
chr12 54748931 54749907 ZNF274 GTRD no Cervix (HeLa-S3) 21550468
chr12 54748931 54749907 ZNF274 GTRD no Cervix (HeLa-S3) 108037396
chr12 54748935 54749719 ZNF274 GTRD no Bone Marrow (K562) 108037397
chr12 54748939 54749974 ZNF274 GTRD no Bone Marrow (K562) 108037398
chr12 54748942 54749803 ZNF143 GTRD no Epithelial (MCF-7) 108037399
chr12 54748960 54749773 ZNF143 GTRD no Epithelial (MCF-7) 108037400
chr12 54748965 54749937 ZNF274 GTRD no Blood (GM12878) 108037401
chr12 54748970 54749801 ZNF274 GTRD no Liver (HepG2) 108037402
chr12 54748990 54749832 ZNF274 GTRD no Bone Marrow (K562) 108037403
chr12 54748993 54749780 ZBTB33 GTRD no Lung (A549) 108037404
chr12 54749004 54749719 ZNF274 GTRD no Bone Marrow (K562) 108037405
chr12 54749009 54749739 ZNF274 GTRD no Blood (GM12878) 108037406
chr12 54749034 54749741 ZNF143 GTRD no Epithelial (MCF-7) 108037407
chr12 54749050 54749645 CTCF GTRD no Spleen 108037408
chr12 54749066 54749696 ZNF143 GTRD no Epithelial (MCF-7) 108037409
chr12 54749068 54749754 ZNF274 GTRD no Bone Marrow (K562) 108037410
chr12 54749078 54749703 ZNF274 GTRD no Cervix (HeLa-S3) 21550469
chr12 54749078 54749703 ZNF274 GTRD no Cervix (HeLa-S3) 108037411
chr12 54749087 54749607 ZNF274 GTRD no Cervix (HeLa-S3) 21550470
chr12 54749087 54749607 ZNF274 GTRD no Cervix (HeLa-S3) 108037412
chr12 54749106 54749741 ZNF143 GTRD no Epithelial (MCF-7) 108037414
chr12 54749118 54749914 ZNF274 GTRD no Blood (GM12878) 108037417
chr12 54749122 54749728 ZNF274 GTRD no Blood (GM12878) 108037418
chr12 54749122 54749929 ZNF274 GTRD no Cervix (HeLa-S3) 21550471
chr12 54749122 54749929 ZNF274 GTRD no Cervix (HeLa-S3) 108037419
chr12 54749123 54749585 ZNF274 GTRD no Cervix (HeLa-S3) 21550472
chr12 54749123 54749585 ZNF274 GTRD no Cervix (HeLa-S3) 108037420
chr12 54749123 54749694 ZNF274 GTRD no Bone Marrow (K562) 108037421
chr12 54749126 54749698 ZNF274 GTRD no Liver (HepG2) 108037422
chr12 54749143 54749624 ZNF274 GTRD no Blood (GM12878) 108037423
chr12 54749149 54749621 ZNF274 GTRD no Liver (HepG2) 108037425
chr12 54749149 54749767 ZNF274 GTRD no Cervix (HeLa-S3) 21550473
chr12 54749149 54749767 ZNF274 GTRD no Cervix (HeLa-S3) 108037426
chr12 54749156 54749688 ZBTB33 GTRD no Lung (A549) 108037427
chr12 54749170 54749711 ZBTB33 GTRD no Lung (A549) 108037428
chr12 54749173 54749597 ZNF143 GTRD no Epithelial (MCF-7) 108037429
chr12 54749173 54749687 CTCF GTRD no Lung 108037430
chr12 54749175 54749572 ZNF274 GTRD no Bone Marrow (K562) 108037432
chr12 54749196 54749667 ZNF274 GTRD no Blood (GM12878) 108037436
chr12 54749226 54749572 CTCF GTRD no Kidney 108037437
chr12 54749238 54749883 ZNF143 GTRD no Epithelial (MCF-7) 108037438
chr12 54749256 54749754 ZBTB33 GTRD no Lung (A549) 108037441
chr12 54749258 54749605 ZNF274 GTRD no Liver (HepG2) 108037442
chr12 54749300 54749574 ZBTB33 GTRD no Brain (SK-N-SH) 21550475
chr12 54749300 54749574 ZBTB33 GTRD no Brain (SK-N-SH) 108037446
chr12 54749563 54749578 NR2C2 JASPAR yes 82412197
chr12 54749563 54749578 NR2C2 JASPAR yes 121036322
chr12 54749566 54749578 TFAP2A JASPAR yes 82412198
chr12 54749566 54749578 TFAP2A JASPAR yes 121036323
Genes associated with rs139955331[chr12:54749567], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More