EnhancerDB
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  3. rs139962532[chr1:19274663]
Enhancers that have rs139962532[chr1:19274663]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs139962532[chr1:19274663]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19274191 19275379 TCF7L2 GTRD no Colon (HCT116) 107802287
chr1 19274653 19274665 YY1 JASPAR yes 27164967
chr1 19274658 19274672 ONECUT1 JASPAR yes 27164968
chr1 19274658 19274672 ONECUT2 JASPAR yes 27164969
chr1 19274658 19274672 ONECUT3 JASPAR yes 27164970
chr1 19274659 19274669 CUX1 JASPAR yes 27164971
chr1 19274659 19274669 CUX2 JASPAR yes 27164972
chr1 19274659 19274670 FOXB1 JASPAR yes 27164973
chr1 19274659 19274670 FOXC1 JASPAR yes 27164974
Genes associated with rs139962532[chr1:19274663], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More