EnhancerDB
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  3. rs140179231[chr17:39074728]
Enhancers that have rs140179231[chr17:39074728]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39055145 39077753 enh17145
Brain (SK-N-MC) Astrocyte Colon (HCT116) Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs140179231[chr17:39074728]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39074608 39074789 TCF7L2 GTRD no Colon (HCT116) 21757289
chr17 39074727 39074739 NHLH1 JASPAR yes 54244621
chr17 39074728 39074737 SNAI2 JASPAR yes 54244622
chr17 39074728 39074738 ID4 JASPAR yes 54244623
chr17 39074728 39074738 NHLH1 JASPAR yes 54244624
chr17 39074728 39074738 TCF3 JASPAR yes 54244625
chr17 39074728 39074738 TCF4 JASPAR yes 54244626
Genes associated with rs140179231[chr17:39074728], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 38544768 38574202 - TOP2A ENSG00000131747.10 38574202 500526 Esophagus 0.0511365 15767