EnhancerDB
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  3. rs140179258[chr1:55030483]
Enhancers that have rs140179258[chr1:55030483]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs140179258[chr1:55030483]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55030470 55030490 RREB1 JASPAR yes 28992972
chr1 55030471 55030491 RREB1 JASPAR yes 28992973
chr1 55030472 55030492 RREB1 JASPAR yes 28992974
chr1 55030473 55030493 RREB1 JASPAR yes 28992975
chr1 55030478 55030492 PLAG1 JASPAR yes 28992976
chr1 55030479 55030484 SP1 TRANSFAC yes 28992977
chr1 55030479 55030494 ZIC3 JASPAR yes 28992978
chr1 55030479 55030494 ZIC4 JASPAR yes 28992979
chr1 55030480 55030494 GLIS2 JASPAR yes 28992980
chr1 55030480 55030494 GLIS3 JASPAR yes 28992981
chr1 55030480 55030494 ZIC1 JASPAR yes 28992982
chr1 55030483 55030488 SP1 TRANSFAC yes 28992983
Genes associated with rs140179258[chr1:55030483], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More