EnhancerDB
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  3. rs140253998[chr17:62998231]
Enhancers that have rs140253998[chr17:62998231]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62953485 63000035 enh4531
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs140253998[chr17:62998231]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62997701 62998271 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21780989
chr17 62998033 62999042 ZBTB33 GTRD no Brain (SK-N-SH) 21780990
chr17 62998221 62998648 ZBTB33 GTRD no Brain (SK-N-SH) 21780991
chr17 62998224 62998243 PAX5 JASPAR yes 55337875
chr17 62998231 62999125 ZBTB33 GTRD no Brain (SK-N-SH) 21780992
Genes associated with rs140253998[chr17:62998231], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 62224587 62340661 - TEX2 ENSG00000136478.3 62340661 657570 Spleen 0.376065 16158