EnhancerDB
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  3. rs140550939[chr1:225641679]
Enhancers that have rs140550939[chr1:225641679]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225626185 225658051 enh950
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs140550939[chr1:225641679]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225641508 225642117 TCF7L2 GTRD no Colon (HCT116) 21384750
chr1 225641673 225641685 PKNOX1 JASPAR yes 35742253
chr1 225641673 225641685 PKNOX2 JASPAR yes 35742254
chr1 225641676 225641687 DMRT3 JASPAR yes 35742255
Genes associated with rs140550939[chr1:225641679], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More