EnhancerDB
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  3. rs142235541[chr1:19254696]
Enhancers that have rs142235541[chr1:19254696]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs142235541[chr1:19254696]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19254687 19254697 SP1 JASPAR yes 27162085
chr1 19254691 19254702 EBF1 JASPAR yes 27162086
chr1 19254691 19254705 EBF1 JASPAR yes 27162087
chr1 19254692 19254706 PLAG1 JASPAR yes 27162088
chr1 19254692 19254707 RFX5 JASPAR yes 27162089
chr1 19254693 19254704 EBF1 JASPAR yes 27162090
Genes associated with rs142235541[chr1:19254696], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More