EnhancerDB
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  3. rs142276728[chr1:205343995]
Enhancers that have rs142276728[chr1:205343995]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205338025 205348135 enh27435
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Astrocyte Bone (Osteoblast) Colon (HCT116) Thyroid Uterus Muscle (Myoblast) Pancreas Muscle (Myotube) Neural Stem Cells (H9) Stomach
Transcript factors that have rs142276728[chr1:205343995]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205342830 205344627 TCF7L2 GTRD no Colon (HCT116) 21371806
chr1 205342848 205344516 TCF7L2 GTRD no Colon (HCT116) 21371807
chr1 205343125 205344618 TCF7L2 GTRD no Colon (HCT116) 21371808
chr1 205343177 205344022 TCF7L2 GTRD no Colon (HCT116) 21371809
chr1 205343194 205343995 TCF7L2 GTRD no Colon (HCT116) 21371810
chr1 205343277 205344475 TCF7L2 GTRD no Colon (HCT116) 21371813
chr1 205343420 205344236 TCF7L2 GTRD no Colon (HCT116) 21371814
chr1 205343459 205344594 TCF7L2 GTRD no Colon (HCT116) 21371815
chr1 205343521 205344273 TCF7L2 GTRD no Colon (HCT116) 21371816
chr1 205343541 205344019 TCF7L2 GTRD no Colon (HCT116) 21371817
chr1 205343751 205344053 ZNF274 GTRD no Cervix (HeLa-S3) 21371818
chr1 205343822 205344198 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21371819
chr1 205343830 205344288 TCF7L2 GTRD no Colon (HCT116) 21371820
chr1 205343848 205344178 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21371821
chr1 205343885 205344205 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21371822
chr1 205343886 205344226 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21371823
chr1 205343898 205344995 AR GTRD no Prostate (PC-3) 21371824
chr1 205343902 205344232 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21371825
chr1 205343920 205344376 TCF7L2 GTRD no Colon (HCT116) 21371826
chr1 205343951 205344207 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21371827
chr1 205343984 205344005 IRF1 JASPAR yes 34757184
chr1 205343988 205344002 IRF7 JASPAR yes 34757185
chr1 205343988 205344003 IRF9 JASPAR yes 34757186
chr1 205343995 205344010 FOXP1 JASPAR yes 34757187
Genes associated with rs142276728[chr1:205343995], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More