EnhancerDB
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Enhancers that have rs142489309[chr12:52546009]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
chr12 52545730 52546132 vista13448
VISTA
Transcript factors that have rs142489309[chr12:52546009]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52545563 52546213 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546480
chr12 52545563 52546213 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033283
chr12 52545601 52546261 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546481
chr12 52545601 52546261 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033284
chr12 52545607 52546147 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033285
chr12 52545652 52546332 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546483
chr12 52545652 52546332 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033288
chr12 52545664 52546120 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546484
chr12 52545664 52546120 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033289
chr12 52545669 52546209 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033290
chr12 52545673 52546177 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546485
chr12 52545673 52546177 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033291
chr12 52545722 52546106 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546486
chr12 52545722 52546106 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033294
chr12 52545722 52546427 POLR2A UCSC Txn Factor no Conserved 108033295
chr12 52545742 52546132 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108033296
chr12 52545743 52546227 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033297
chr12 52545768 52546344 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033298
chr12 52545781 52546217 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033299
chr12 52545812 52546595 ZBTB33 GTRD no Lung (A549) 108033300
chr12 52545815 52546185 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546487
chr12 52545815 52546185 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033301
chr12 52545821 52546472 TCF7L2 GTRD no Colon (HCT116) 21546488
chr12 52545821 52546472 TCF7L2 GTRD no Colon (HCT116) 108033302
chr12 52545831 52546209 CTCF UCSC Txn Factor no Conserved 108033303
chr12 52545834 52546230 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546489
chr12 52545834 52546230 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033304
chr12 52545835 52546299 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546490
chr12 52545835 52546299 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033305
chr12 52545844 52546204 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108033306
chr12 52545845 52546165 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108033307
chr12 52545846 52546170 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108033308
chr12 52545847 52546157 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546491
chr12 52545847 52546157 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033309
chr12 52545847 52546819 ZBTB33 GTRD no Lung (A549) 108033310
chr12 52545860 52546190 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108033311
chr12 52545871 52546241 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108033312
chr12 52545872 52546561 ZNF274 GTRD no Bone Marrow (K562) 108033313
chr12 52545873 52546149 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108033314
chr12 52545882 52546272 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108033315
chr12 52545884 52546348 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21546492
chr12 52545884 52546348 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108033316
chr12 52545887 52546263 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546493
chr12 52545887 52546263 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033317
chr12 52545893 52546269 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21546494
chr12 52545893 52546269 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108033318
chr12 52545897 52546187 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108033319
chr12 52545898 52546154 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108033320
chr12 52545899 52546229 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108033321
chr12 52545907 52546142 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546495
chr12 52545907 52546142 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033322
chr12 52545908 52546190 RAD21 UCSC Txn Factor no Conserved 108033323
chr12 52545910 52546200 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108033324
chr12 52545911 52546181 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108033325
chr12 52545912 52546172 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546496
chr12 52545912 52546172 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033326
chr12 52545915 52546145 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546497
chr12 52545915 52546145 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108033327
chr12 52545923 52546147 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546498
chr12 52545923 52546147 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108033328
chr12 52545926 52546128 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033329
chr12 52545928 52546127 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21546499
chr12 52545928 52546127 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108033330
chr12 52545931 52546287 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546500
chr12 52545931 52546287 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033331
chr12 52545938 52546128 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108033332
chr12 52545938 52546131 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546501
chr12 52545938 52546131 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033333
chr12 52545938 52546168 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033334
chr12 52545938 52546175 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108033335
chr12 52545939 52546169 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546502
chr12 52545939 52546169 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033336
chr12 52545942 52546626 ZNF274 GTRD no Bone Marrow (K562) 108033337
chr12 52545954 52546132 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108033338
chr12 52545964 52546169 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108033339
chr12 52545964 52546329 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546503
chr12 52545964 52546329 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033340
chr12 52545974 52546284 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108033341
chr12 52545976 52546127 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108033342
chr12 52545976 52546286 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033343
chr12 52545982 52546262 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033344
chr12 52545984 52546107 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108033345
chr12 52545992 52546302 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108033346
chr12 52545992 52546529 ZNF274 GTRD no Bone Marrow (K562) 108033347
chr12 52546007 52546012 SP1 TRANSFAC yes 82405857
chr12 52546007 52546012 SP1 TRANSFAC yes 120922540
Genes associated with rs142489309[chr12:52546009], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More