EnhancerDB
  1. Home
  2. SNP
  3. rs142540547[chr16:87887958]
Enhancers that have rs142540547[chr16:87887958]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 87873744 87902035 enh4182
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Muscle (A673) Heart
Transcript factors that have rs142540547[chr16:87887958]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 87883470 87890813 POLR2A UCSC Txn Factor no Conserved 108221259
chr16 87883470 87890813 POLR2A UCSC Txn Factor no Conserved 108221260
chr16 87883470 87890813 POLR2A UCSC Txn Factor no Conserved 108221261
chr16 87886986 87888750 ZNF274 GTRD no Liver (HepG2) 21735201
chr16 87886986 87888750 ZNF274 GTRD no Liver (HepG2) 108221270
chr16 87887177 87888359 EP300 UCSC Txn Factor no Conserved 108221271
chr16 87887634 87888728 AR GTRD no Prostate (PC-3) 21735202
chr16 87887634 87888728 AR GTRD no Prostate (PC-3) 108221272
chr16 87887752 87888322 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108221273
chr16 87887799 87888520 GATA2 UCSC Txn Factor no Conserved 108221274
chr16 87887801 87888241 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21735203
chr16 87887801 87888241 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108221275
chr16 87887801 87888398 TEAD4 UCSC Txn Factor no Conserved 108221276
chr16 87887832 87888436 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735204
chr16 87887832 87888436 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108221277
chr16 87887867 87888606 GATA1 UCSC Txn Factor no Conserved 108221278
chr16 87887893 87888429 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21735205
chr16 87887893 87888429 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108221279
chr16 87887915 87888385 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108221280
chr16 87887922 87888386 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21735206
chr16 87887922 87888386 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108221281
chr16 87887923 87888567 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21735207
chr16 87887923 87888567 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108221282
chr16 87887940 87888470 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735208
chr16 87887940 87888470 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108221283
chr16 87887943 87887958 FOXP1 JASPAR yes 12247569
chr16 87887944 87887959 FOXA1 JASPAR yes 12247571
chr16 87887949 87888465 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735209
chr16 87887949 87888465 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108221284
chr16 87887952 87887958 SOX10 JASPAR yes 12247587
chr16 87887952 87887970 IRF2 JASPAR yes 12247588
chr16 87887953 87887969 SOX4 JASPAR yes 12247589
chr16 87887955 87887970 STAT2 JASPAR yes 12247590
chr16 87887956 87887970 STAT1 JASPAR yes 12247591
chr16 87887957 87887969 IRF1 JASPAR yes 12247592
Genes associated with rs142540547[chr16:87887958], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More