EnhancerDB
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  3. rs142560441[chr1:225954650]
Enhancers that have rs142560441[chr1:225954650]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 225954390 225955885 vista141
VISTA
Transcript factors that have rs142560441[chr1:225954650]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225954491 225954954 ZNF274 GTRD no Bone Marrow (K562) 107874957
chr1 225954566 225955082 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385822
chr1 225954566 225955082 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107874958
chr1 225954584 225955060 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385823
chr1 225954584 225955060 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107874959
chr1 225954612 225954828 ZNF274 GTRD no Bone Marrow (K562) 107874960
chr1 225954635 225954925 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385824
chr1 225954635 225954925 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107874961
chr1 225954635 225954991 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 107874962
chr1 225954637 225955044 STAT3 UCSC Txn Factor no Conserved 107874963
chr1 225954644 225954662 MAFF JASPAR yes 35769518
chr1 225954644 225954662 MAFF JASPAR yes 71159779
chr1 225954647 225954662 ESR2 JASPAR yes 35769519
chr1 225954647 225954662 ESR2 JASPAR yes 71159780
chr1 225954648 225954652 ESR1 TRANSFAC yes 35769520
chr1 225954648 225954652 ESR1 TRANSFAC yes 71159781
chr1 225954649 225954660 NRL JASPAR yes 35769521
chr1 225954649 225954660 NRL JASPAR yes 71159782
Genes associated with rs142560441[chr1:225954650], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More