EnhancerDB
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  3. rs142580896[chr19:13267384]
Enhancers that have rs142580896[chr19:13267384]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13265805 13289518 enh17931
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs142580896[chr19:13267384]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13260320 13268266 POLR2A UCSC Txn Factor no Conserved 108388799
chr19 13260320 13268266 POLR2A UCSC Txn Factor no Conserved 108388800
chr19 13260320 13268266 POLR2A UCSC Txn Factor no Conserved 108388801
chr19 13262705 13267578 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21850679
chr19 13262705 13267578 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108389005
chr19 13262705 13267578 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108389006
chr19 13265609 13267537 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108389047
chr19 13265685 13267602 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108389049
chr19 13266990 13267541 TCF7L2 GTRD no Colon (HCT116) 21850842
chr19 13266990 13267541 TCF7L2 GTRD no Colon (HCT116) 108389168
chr19 13267007 13267387 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21850843
chr19 13267007 13267387 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108389169
chr19 13267007 13267407 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21850844
chr19 13267007 13267407 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108389170
chr19 13267257 13267465 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21850845
chr19 13267373 13267384 EBF1 JASPAR yes 112513049
chr19 13267382 13267387 GATA2 JASPAR yes 112513051
Genes associated with rs142580896[chr19:13267384], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More