EnhancerDB
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  3. rs143120966[chr17:2042211]
Enhancers that have rs143120966[chr17:2042211]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 2037625 2052035 enh4206
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Esophagus Blood (GM12878) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Muscle (A673) Heart
Transcript factors that have rs143120966[chr17:2042211]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 2039868 2045796 ZBTB33 GTRD no Lung (A549) 108229838
chr17 2039900 2044180 ZNF274 GTRD no Blood (GM12878) 21739462
chr17 2039900 2044180 ZNF274 GTRD no Blood (GM12878) 108229839
chr17 2040308 2044213 ZBTB33 GTRD no Lung (A549) 108229840
chr17 2040331 2045046 ZBTB33 GTRD no Lung (A549) 108229842
chr17 2040333 2044280 ZBTB33 GTRD no Lung (A549) 108229843
chr17 2040405 2044270 ZBTB33 GTRD no Lung (A549) 108229844
chr17 2040457 2044104 ZBTB33 GTRD no Lung (A549) 108229845
chr17 2040501 2043102 ZNF143 GTRD no Epithelial (MCF-7) 108229846
chr17 2040601 2043519 ZBTB33 GTRD no Lung (A549) 108229849
chr17 2040629 2043293 ZBTB33 GTRD no Lung (A549) 108229851
chr17 2040649 2043948 ZBTB33 GTRD no Lung (A549) 108229855
chr17 2040683 2043273 ZNF274 GTRD no Blood (GM12878) 21739468
chr17 2040683 2043273 ZNF274 GTRD no Blood (GM12878) 108229859
chr17 2040700 2042933 ZNF143 GTRD no Epithelial (MCF-7) 108229862
chr17 2040902 2042736 TCF7L2 GTRD no Colon (HCT116) 21739476
chr17 2040902 2042736 TCF7L2 GTRD no Colon (HCT116) 108229872
chr17 2040902 2043284 TCF7L2 GTRD no Colon (HCT116) 21739477
chr17 2040902 2043284 TCF7L2 GTRD no Colon (HCT116) 108229873
chr17 2040902 2044270 ZNF274 GTRD no Blood (GM12878) 21739478
chr17 2040902 2044270 ZNF274 GTRD no Blood (GM12878) 108229874
chr17 2040904 2043475 ZBTB33 GTRD no Lung (A549) 108229875
chr17 2040905 2044668 ZBTB33 GTRD no Lung (A549) 108229876
chr17 2040922 2042948 ZBTB33 GTRD no Lung (A549) 108229877
chr17 2040928 2043308 TCF7L2 GTRD no Colon (HCT116) 21739479
chr17 2040928 2043308 TCF7L2 GTRD no Colon (HCT116) 108229878
chr17 2040952 2043383 ZNF274 GTRD no Blood (GM12878) 21739481
chr17 2040952 2043383 ZNF274 GTRD no Blood (GM12878) 108229881
chr17 2040955 2043395 ZNF143 GTRD no Epithelial (MCF-7) 108229882
chr17 2040961 2042537 ZNF143 GTRD no Epithelial (MCF-7) 108229883
chr17 2040961 2043079 TCF7L2 GTRD no Colon (HCT116) 21739482
chr17 2040961 2043079 TCF7L2 GTRD no Colon (HCT116) 108229884
chr17 2040965 2043009 ZBTB33 GTRD no Lung (A549) 108229885
chr17 2042203 2042220 RARA JASPAR yes 52728540
chr17 2042204 2042221 PAX1 JASPAR yes 52728542
chr17 2042204 2042221 PAX9 JASPAR yes 52728543
chr17 2042205 2042219 PAX6 JASPAR yes 52728544
chr17 2042205 2042224 PAX5 JASPAR yes 52728545
Genes associated with rs143120966[chr17:2042211], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More