EnhancerDB
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  3. rs143218948[chr17:55504088]
Enhancers that have rs143218948[chr17:55504088]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55477469 55505815 enh4487
Brain (SK-N-MC) Blood (Karpas-422) Pancreas Uterus Stomach Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Blood (GM12878) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs143218948[chr17:55504088]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55504079 55504091 TFAP2A JASPAR yes 54954384
chr17 55504079 55504091 TFAP2B JASPAR yes 54954385
chr17 55504079 55504091 TFAP2C JASPAR yes 54954386
chr17 55504079 55504094 TFAP2A JASPAR yes 54954387
chr17 55504079 55504094 TFAP2C JASPAR yes 54954388
chr17 55504080 55504091 TFAP2A JASPAR yes 54954389
chr17 55504080 55504091 TFAP2B JASPAR yes 54954390
chr17 55504080 55504091 TFAP2C JASPAR yes 54954391
chr17 55504081 55504090 TFAP2A JASPAR yes 54954392
chr17 55504086 55504090 LFA1 TRANSFAC yes 54954393
Genes associated with rs143218948[chr17:55504088], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More