EnhancerDB
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  3. rs143684258[chr1:25049466]
Enhancers that have rs143684258[chr1:25049466]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 25026945 25066186 enh139
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs143684258[chr1:25049466]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 25049460 25049470 RORA JASPAR yes 27523141
chr1 25049461 25049481 PPARG JASPAR yes 27523142
chr1 25049462 25049480 ESR1 JASPAR yes 27523143
chr1 25049462 25049480 ESR2 JASPAR yes 27523144
chr1 25049462 25049480 NR3C1 JASPAR yes 27523145
chr1 25049463 25049469 ESR1 TRANSFAC yes 27523146
chr1 25049464 25049479 ESR2 JASPAR yes 27523147
chr1 25049464 25049484 ESR1 JASPAR yes 27523148
chr1 25049465 25049469 ESR1 TRANSFAC yes 27523149
Genes associated with rs143684258[chr1:25049466], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More