EnhancerDB
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  3. rs143854006[chr12:52549808]
Enhancers that have rs143854006[chr12:52549808]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs143854006[chr12:52549808]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52549793 52549809 SOX4 JASPAR yes 120923110
chr12 52549796 52549811 HNF4G JASPAR yes 120923111
chr12 52549796 52549811 NR2C2 JASPAR yes 120923112
chr12 52549797 52549811 NR2F1 JASPAR yes 120923113
chr12 52549797 52549811 RXRB JASPAR yes 120923114
chr12 52549797 52549811 RXRG JASPAR yes 120923115
chr12 52549797 52549812 HNF4A JASPAR yes 120923116
chr12 52549805 52549822 RARA JASPAR yes 120923118
chr12 52549805 52549822 RXRA JASPAR yes 120923119
Genes associated with rs143854006[chr12:52549808], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More