EnhancerDB
  1. Home
  2. SNP
  3. rs143932516[chr19:2580412]
Enhancers that have rs143932516[chr19:2580412]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2555465 2582297 enh17850
Astrocyte Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Brain (SK-N-SH) Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung
Transcript factors that have rs143932516[chr19:2580412]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2577855 2580415 ZBTB33 GTRD no Lung (A549) 108362537
chr19 2578499 2580567 TCF7L2 GTRD no Colon (HCT116) 108362603
chr19 2578749 2580422 ZNF143 GTRD no Epithelial (MCF-7) 21837275
chr19 2578749 2580422 ZNF143 GTRD no Epithelial (MCF-7) 108362633
chr19 2580405 2580419 GLIS3 JASPAR yes 112077997
Genes associated with rs143932516[chr19:2580412], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More