EnhancerDB
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  3. rs143969001[chr17:25837856]
Enhancers that have rs143969001[chr17:25837856]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25791425 25838215 enh17063
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Pancreas Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Bone (Osteoblast) Lung (A549) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs143969001[chr17:25837856]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25837848 25837863 HNF4A JASPAR yes 53639123
chr17 25837849 25837863 RXRB JASPAR yes 53639124
chr17 25837849 25837863 RXRG JASPAR yes 53639125
chr17 25837849 25837864 HNF4G JASPAR yes 53639126
chr17 25837849 25837864 LEF1 JASPAR yes 53639127
chr17 25837849 25837864 NR2C2 JASPAR yes 53639128
chr17 25837850 25837864 TCF7L2 JASPAR yes 53639129
chr17 25837853 25837859 LEF1 TRANSFAC yes 53639130
chr17 25837853 25837859 TCF4 TRANSFAC yes 53639131
Genes associated with rs143969001[chr17:25837856], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More