EnhancerDB
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  3. rs146059939[chr17:59397249]
Enhancers that have rs146059939[chr17:59397249]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 59383635 59420035 enh17269
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs146059939[chr17:59397249]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 59396443 59400405 ZNF143 GTRD no Epithelial (MCF-7) 21777324
chr17 59396443 59400405 ZNF143 GTRD no Epithelial (MCF-7) 108279396
chr17 59397229 59397250 IRF1 JASPAR yes 55147840
chr17 59397232 59397253 IRF1 JASPAR yes 55147842
chr17 59397235 59397249 SPI1 JASPAR yes 55147843
chr17 59397235 59397256 IRF1 JASPAR yes 55147844
chr17 59397239 59397260 IRF1 JASPAR yes 55147845
chr17 59397241 59397256 FOXP1 JASPAR yes 55147846
chr17 59397245 59397266 IRF1 JASPAR yes 55147847
chr17 59397246 59397267 IRF1 JASPAR yes 55147848
chr17 59397248 59397252 YY1 TRANSFAC yes 55147849
chr17 59397248 59397263 FOXP1 JASPAR yes 55147850
Genes associated with rs146059939[chr17:59397249], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More