EnhancerDB
  1. Home
  2. SNP
  3. rs146236823[chr12:52598708]
Enhancers that have rs146236823[chr12:52598708]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52591245 52620175 enh14727
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs146236823[chr12:52598708]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52598695 52599356 TCF7L2 GTRD no Colon (HCT116) 21546658
chr12 52598701 52598711 SP1 JASPAR yes 120927628
chr12 52598702 52598711 SP1 TRANSFAC yes 120927629
chr12 52598703 52598708 SP1 TRANSFAC yes 120927630
chr12 52598704 52598709 SP1 TRANSFAC yes 120927631
chr12 52598704 52598710 SP1 TRANSFAC yes 120927632
chr12 52598708 52598712 LFA1 TRANSFAC yes 120927633
Genes associated with rs146236823[chr12:52598708], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More