EnhancerDB
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  3. rs1475356[chr6:12052266]
Enhancers that have rs1475356[chr6:12052266]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 12042640 12055275 enh8953
Skin (Keratinocyte) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Muscle (A673) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Spleen Muscle (Myotube) Blood (T-cell) Stomach
chr6 12052115 12052407 vista50882
VISTA
Transcript factors that have rs1475356[chr6:12052266]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 12051998 12052442 NFIC UCSC Txn Factor no Conserved 108538515
chr6 12052021 12052429 RELA UCSC Txn Factor no Conserved 108538516
chr6 12052025 12052410 EP300 UCSC Txn Factor no Conserved 108538517
chr6 12052063 12052414 RUNX3 UCSC Txn Factor no Conserved 108538518
chr6 12052087 12052367 FOXM1 UCSC Txn Factor no Conserved 108538519
chr6 12052115 12052329 BATF UCSC Txn Factor no Conserved 108538520
chr6 12052127 12052291 SPI1 UCSC Txn Factor no Conserved 108538521
chr6 12052262 12052266 H1TF2 TRANSFAC yes 70312160
chr6 12052262 12052266 NFE TRANSFAC yes 70312161
chr6 12052262 12052266 SRF TRANSFAC yes 70312162
chr6 12052262 12052266 H1TF2 TRANSFAC yes 99940894
chr6 12052262 12052266 NFE TRANSFAC yes 99940895
chr6 12052262 12052266 SRF TRANSFAC yes 99940896
Genes associated with rs1475356[chr6:12052266], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr6 11094266 11138964 + SMIM13 ENSG00000224531.4 11094266 913302 Pancreas 0.327376 6157