EnhancerDB
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  3. rs148552928[chr17:40405962]
Enhancers that have rs148552928[chr17:40405962]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 40390345 40414201 enh4414
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Heart
Transcript factors that have rs148552928[chr17:40405962]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 40405946 40405967 IRF1 JASPAR yes 54290148
chr17 40405948 40405963 STAT2 JASPAR yes 54290150
chr17 40405949 40405963 STAT1 JASPAR yes 54290151
chr17 40405950 40405964 IRF8 JASPAR yes 54290152
chr17 40405950 40405965 IRF9 JASPAR yes 54290153
Genes associated with rs148552928[chr17:40405962], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More