EnhancerDB
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  3. rs149028146[chr19:13962757]
Enhancers that have rs149028146[chr19:13962757]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13941465 13967615 enh5016
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs149028146[chr19:13962757]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13961555 13963254 TCF7L2 GTRD no Colon (HCT116) 21852649
chr19 13961783 13964126 TCF7L2 GTRD no Colon (HCT116) 21852661
chr19 13961785 13963314 TCF7L2 GTRD no Colon (HCT116) 21852662
chr19 13961805 13964332 TCF7L2 GTRD no Colon (HCT116) 21852665
chr19 13961822 13964144 TCF7L2 GTRD no Colon (HCT116) 21852666
chr19 13961916 13963237 TCF7L2 GTRD no Colon (HCT116) 21852677
chr19 13962152 13963540 ZNF274 GTRD no Bone Marrow (K562) 21852723
chr19 13962301 13963257 TCF7L2 GTRD no Colon (HCT116) 21852726
chr19 13962322 13963374 TCF7L2 GTRD no Colon (HCT116) 21852727
chr19 13962496 13963052 ZNF274 GTRD no Bone Marrow (K562) 21852729
chr19 13962599 13964143 TCF7L2 GTRD no Colon (HCT116) 21852730
chr19 13962674 13963833 ZNF274 GTRD no Blood (GM12878) 21852731
chr19 13962741 13962762 IRF1 JASPAR yes 112538525
chr19 13962747 13962768 IRF1 JASPAR yes 112538526
chr19 13962753 13962768 MEF2C JASPAR yes 112538527
chr19 13962754 13962766 MEF2A JASPAR yes 112538528
chr19 13962756 13962767 PHOX2A JASPAR yes 112538529
chr19 13962756 13962767 PROP1 JASPAR yes 112538530
chr19 13962756 13962772 POU4F2 JASPAR yes 112538531
chr19 13962756 13962772 POU4F3 JASPAR yes 112538532
Genes associated with rs149028146[chr19:13962757], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More