EnhancerDB
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  3. rs150006458[chr2:25842223]
Enhancers that have rs150006458[chr2:25842223]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 25836360 25845235 enh33144
Skin (Keratinocyte) Prostate (PC-3) Kidney Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Ovary Lung (PC-9) Bone (Osteoblast) Stomach Pancreas (Panc1) Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs150006458[chr2:25842223]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 25842210 25842224 TLX1 JASPAR yes 72491339
chr2 25842211 25842225 TLX1 JASPAR yes 72491340
chr2 25842219 25842225 NFIC JASPAR yes 72491341
chr2 25842220 25842230 ESX1 JASPAR yes 72491342
chr2 25842220 25842230 GBX1 JASPAR yes 72491343
chr2 25842220 25842230 GBX2 JASPAR yes 72491344
chr2 25842220 25842230 GSX1 JASPAR yes 72491345
chr2 25842220 25842230 GSX2 JASPAR yes 72491346
chr2 25842220 25842230 HESX1 JASPAR yes 72491347
chr2 25842220 25842230 LBX2 JASPAR yes 72491348
chr2 25842220 25842230 LHX2 JASPAR yes 72491349
chr2 25842220 25842230 MNX1 JASPAR yes 72491350
chr2 25842220 25842230 RAX JASPAR yes 72491351
chr2 25842221 25842225 H1TF2 TRANSFAC yes 72491352
chr2 25842221 25842225 NFE TRANSFAC yes 72491353
chr2 25842221 25842225 SRF TRANSFAC yes 72491354
chr2 25842221 25842229 BARX1 JASPAR yes 72491355
chr2 25842221 25842229 BSX JASPAR yes 72491356
chr2 25842221 25842229 DLX6 JASPAR yes 72491357
chr2 25842221 25842229 ISX JASPAR yes 72491358
chr2 25842221 25842229 LBX1 JASPAR yes 72491359
chr2 25842221 25842229 LHX9 JASPAR yes 72491360
chr2 25842221 25842229 MSX1 JASPAR yes 72491361
chr2 25842221 25842229 MSX2 JASPAR yes 72491362
chr2 25842221 25842229 NKX6-2 JASPAR yes 72491363
chr2 25842221 25842229 PRRX1 JASPAR yes 72491364
chr2 25842221 25842229 RAX2 JASPAR yes 72491365
chr2 25842221 25842229 SHOX JASPAR yes 72491366
chr2 25842221 25842229 UNCX JASPAR yes 72491367
Genes associated with rs150006458[chr2:25842223], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More