EnhancerDB
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  3. rs16830397[chr3:127473961]
Enhancers that have rs16830397[chr3:127473961]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 127460425 127476155 enh7513
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Heart
chr3 127473675 127474224 vista42329
VISTA
Transcript factors that have rs16830397[chr3:127473961]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 127473479 127474190 RUNX3 UCSC Txn Factor no Conserved 108530250
chr3 127473700 127474181 RELA UCSC Txn Factor no Conserved 108530251
chr3 127473701 127474173 NFIC UCSC Txn Factor no Conserved 108530252
chr3 127473733 127474060 EBF1 UCSC Txn Factor no Conserved 108530253
chr3 127473951 127473964 TFAP2A JASPAR yes 5544825
chr3 127473951 127473964 TFAP2A JASPAR yes 71047335
Genes associated with rs16830397[chr3:127473961], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More