EnhancerDB
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  3. rs16842027[chr1:223887164]
Enhancers that have rs16842027[chr1:223887164]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 223886085 223931782 enh12712
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs16842027[chr1:223887164]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 223886100 223887246 ZNF143 GTRD no Epithelial (MCF-7) 21383734
chr1 223886180 223887255 ZNF143 GTRD no Epithelial (MCF-7) 21383735
chr1 223886185 223887173 ZNF143 GTRD no Epithelial (MCF-7) 21383736
chr1 223886226 223887169 ZNF143 GTRD no Epithelial (MCF-7) 21383740
chr1 223886236 223887241 ZNF274 GTRD no Liver (HepG2) 21383741
chr1 223886273 223887298 AR GTRD no Prostate (PC-3) 21383743
chr1 223886350 223887352 ZNF274 GTRD no Cervix (HeLa-S3) 21383748
chr1 223886370 223887225 ZNF143 GTRD no Epithelial (MCF-7) 21383751
chr1 223886396 223887184 ZNF274 GTRD no Liver (HepG2) 21383757
chr1 223886409 223887193 ZNF143 GTRD no Epithelial (MCF-7) 21383760
chr1 223886436 223887217 ZNF143 GTRD no Epithelial (MCF-7) 21383767
chr1 223886463 223887380 ZNF274 GTRD no Cervix (HeLa-S3) 21383779
chr1 223886474 223887184 ZNF274 GTRD no Cervix (HeLa-S3) 21383783
Genes associated with rs16842027[chr1:223887164], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More