EnhancerDB
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  3. rs16852397[chr1:178030601]
Enhancers that have rs16852397[chr1:178030601]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 178015665 178033840 enh12406
Prostate (PC-3) Liver (HepG2) Brain (SK-N-MC) Large Intestine Lung (PC-9) Esophagus Astrocyte Lung Stomach Muscle (A673) Placenta Colon (HCT116) Uterus Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Heart
Transcript factors that have rs16852397[chr1:178030601]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 178030279 178031004 MYOD GTRD no Muscle (Myoblast) 21352428
chr1 178030591 178030602 HOXC12 JASPAR yes 33391168
chr1 178030591 178030602 HOXC13 JASPAR yes 33391169
Genes associated with rs16852397[chr1:178030601], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More