EnhancerDB
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  3. rs16852850[chr1:204072535]
Enhancers that have rs16852850[chr1:204072535]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204045525 204080675 enh12573
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs16852850[chr1:204072535]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204072244 204075553 TCF7L2 GTRD no Colon (HCT116) 21370170
chr1 204072244 204075553 TCF7L2 GTRD no Colon (HCT116) 107859641
chr1 204072325 204075054 TCF7L2 GTRD no Colon (HCT116) 21370171
chr1 204072325 204075054 TCF7L2 GTRD no Colon (HCT116) 107859642
chr1 204072326 204075632 TCF7L2 GTRD no Colon (HCT116) 21370172
chr1 204072326 204075632 TCF7L2 GTRD no Colon (HCT116) 107859643
chr1 204072327 204075533 TCF7L2 GTRD no Colon (HCT116) 21370173
chr1 204072327 204075533 TCF7L2 GTRD no Colon (HCT116) 107859644
chr1 204072348 204075940 ZNF274 GTRD no Cervix (HeLa-S3) 21370174
chr1 204072348 204075940 ZNF274 GTRD no Cervix (HeLa-S3) 107859645
chr1 204072359 204075514 TCF7L2 GTRD no Colon (HCT116) 21370175
chr1 204072359 204075514 TCF7L2 GTRD no Colon (HCT116) 107859646
chr1 204072392 204077605 ZNF143 GTRD no Epithelial (MCF-7) 21370176
chr1 204072392 204077605 ZNF143 GTRD no Epithelial (MCF-7) 107859647
chr1 204072512 204075869 ZNF143 GTRD no Epithelial (MCF-7) 21370177
chr1 204072512 204075869 ZNF143 GTRD no Epithelial (MCF-7) 107859648
chr1 204072531 204072545 NR2F1 JASPAR yes 34680353
Genes associated with rs16852850[chr1:204072535], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More