EnhancerDB
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  3. rs16874153[chr6:13428397]
Enhancers that have rs16874153[chr6:13428397]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 13417125 13443009 enh8962
Brain (SK-N-MC) Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Placenta Muscle (Myotube) Lung Muscle (A673) Heart
Transcript factors that have rs16874153[chr6:13428397]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 13427953 13428867 NFIC UCSC Txn Factor no Conserved 108538597
chr6 13427977 13428828 RUNX3 UCSC Txn Factor no Conserved 108538598
chr6 13428381 13428743 SPI1 UCSC Txn Factor no Conserved 108538599
chr6 13428384 13428397 EOMES JASPAR yes 100029559
chr6 13428389 13428404 HNF4A JASPAR yes 100029561
chr6 13428390 13428404 RXRB JASPAR yes 100029562
chr6 13428390 13428404 RXRG JASPAR yes 100029563
chr6 13428390 13428405 HNF4G JASPAR yes 100029564
chr6 13428390 13428405 NR2C2 JASPAR yes 100029565
chr6 13428393 13428741 ATF2 UCSC Txn Factor no Conserved 108538600
Genes associated with rs16874153[chr6:13428397], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More