EnhancerDB
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  3. rs17111408[chr1:94788623]
Enhancers that have rs17111408[chr1:94788623]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 94779785 94813175 enh12071
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs17111408[chr1:94788623]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 94788212 94788781 ZNF143 GTRD no Epithelial (MCF-7) 107815549
chr1 94788302 94788728 ZNF143 GTRD no Epithelial (MCF-7) 107815551
chr1 94788323 94788863 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107815552
chr1 94788335 94788695 ZNF143 GTRD no Epithelial (MCF-7) 107815553
chr1 94788354 94788665 ZNF143 GTRD no Epithelial (MCF-7) 107815554
chr1 94788354 94788727 CTCF UCSC Txn Factor no Conserved 107815555
chr1 94788375 94788751 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 107815556
chr1 94788376 94788742 ZNF143 GTRD no Epithelial (MCF-7) 107815557
chr1 94788421 94788637 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107815558
chr1 94788435 94788650 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 107815559
chr1 94788621 94788639 RARA JASPAR yes 30872964
Genes associated with rs17111408[chr1:94788623], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More