EnhancerDB
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  3. rs17404350[chr1:204057142]
Enhancers that have rs17404350[chr1:204057142]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204045525 204080675 enh12573
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs17404350[chr1:204057142]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204056779 204058279 TEF1 GTRD no Bone (Osteoblast) 21370125
chr1 204056779 204058279 TEF1 GTRD no Bone (Osteoblast) 107859592
chr1 204056930 204058304 ZBTB33 GTRD no Brain (SK-N-SH) 21370126
chr1 204056930 204058304 ZBTB33 GTRD no Brain (SK-N-SH) 107859593
chr1 204056945 204058865 TCF7L2 GTRD no Colon (HCT116) 21370127
chr1 204056945 204058865 TCF7L2 GTRD no Colon (HCT116) 107859594
chr1 204056957 204058295 ZNF274 GTRD no Cervix (HeLa-S3) 21370128
chr1 204056957 204058295 ZNF274 GTRD no Cervix (HeLa-S3) 107859595
chr1 204056974 204058291 ZNF274 GTRD no Cervix (HeLa-S3) 21370129
chr1 204056974 204058291 ZNF274 GTRD no Cervix (HeLa-S3) 107859596
chr1 204056978 204058216 ZNF274 GTRD no Cervix (HeLa-S3) 21370130
chr1 204056978 204058216 ZNF274 GTRD no Cervix (HeLa-S3) 107859597
chr1 204057028 204058331 ZNF274 GTRD no Cervix (HeLa-S3) 21370131
chr1 204057028 204058331 ZNF274 GTRD no Cervix (HeLa-S3) 107859598
chr1 204057042 204058298 ZBTB33 GTRD no Brain (SK-N-SH) 21370132
chr1 204057042 204058298 ZBTB33 GTRD no Brain (SK-N-SH) 107859599
chr1 204057047 204058185 TCF7L2 GTRD no Colon (HCT116) 21370133
chr1 204057047 204058185 TCF7L2 GTRD no Colon (HCT116) 107859600
chr1 204057051 204058352 TCF7L2 GTRD no Colon (HCT116) 21370134
chr1 204057051 204058352 TCF7L2 GTRD no Colon (HCT116) 107859601
chr1 204057106 204058234 TCF7L2 GTRD no Colon (HCT116) 21370135
chr1 204057106 204058234 TCF7L2 GTRD no Colon (HCT116) 107859602
chr1 204057107 204058401 ZNF274 GTRD no Cervix (HeLa-S3) 21370136
chr1 204057107 204058401 ZNF274 GTRD no Cervix (HeLa-S3) 107859603
Genes associated with rs17404350[chr1:204057142], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More