EnhancerDB
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  3. rs17557288[chr1:223904323]
Enhancers that have rs17557288[chr1:223904323]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 223886085 223931782 enh12712
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs17557288[chr1:223904323]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 223904015 223904371 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21383914
chr1 223904015 223904371 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 107873103
chr1 223904267 223904637 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21383915
chr1 223904267 223904637 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107873104
chr1 223904319 223904328 HIC2 JASPAR yes 35671766
chr1 223904322 223904326 LFA1 TRANSFAC yes 35671767
Genes associated with rs17557288[chr1:223904323], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More