EnhancerDB
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  3. rs17654987[chr17:65516528]
Enhancers that have rs17654987[chr17:65516528]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 65492714 65528744 enh17323
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Astrocyte Bone (Osteoblast) Lung (A549) Blood (GM12878) Stomach Placenta Colon (HCT116) Uterus Pancreas (Panc1) Lung (PC-9) Pancreas Spleen Neural Stem Cells (H9) Blood (T-cell) Heart
Transcript factors that have rs17654987[chr17:65516528]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 65515459 65517175 TCF7L2 GTRD no Colon (HCT116) 21782347
chr17 65515459 65517175 TCF7L2 GTRD no Colon (HCT116) 108286041
chr17 65515632 65516829 TEF1 GTRD no Bone (Osteoblast) 21782348
chr17 65515632 65516829 TEF1 GTRD no Bone (Osteoblast) 108286042
chr17 65516316 65517245 TCF7L2 GTRD no Colon (HCT116) 21782349
chr17 65516316 65517245 TCF7L2 GTRD no Colon (HCT116) 108286043
chr17 65516327 65516786 TCF7L2 GTRD no Colon (HCT116) 21782350
chr17 65516327 65516786 TCF7L2 GTRD no Colon (HCT116) 108286044
chr17 65516369 65517444 TCF7L2 GTRD no Colon (HCT116) 21782351
chr17 65516369 65517444 TCF7L2 GTRD no Colon (HCT116) 108286045
chr17 65516437 65517085 TCF7L2 GTRD no Colon (HCT116) 21782352
chr17 65516437 65517085 TCF7L2 GTRD no Colon (HCT116) 108286046
chr17 65516524 65516538 NR2F1 JASPAR yes 55515690
chr17 65516528 65516538 RORA JASPAR yes 55515691
Genes associated with rs17654987[chr17:65516528], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More