EnhancerDB
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  3. rs17668952[chr4:88003262]
Enhancers that have rs17668952[chr4:88003262]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr4 87972425 88005135 enh8079
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs17668952[chr4:88003262]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr4 88003257 88003267 HOXA13 JASPAR yes 91103234
chr4 88003259 88003272 DUXA JASPAR yes 91103235
chr4 88003260 88003271 DUX4 JASPAR yes 91103236
chr4 88003261 88003266 NFY TRANSFAC yes 91103237
Genes associated with rs17668952[chr4:88003262], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr4 87856154 88062206 + AFF1 ENSG00000172493.16 87856154 0 Esophagus 0.234971 4848