EnhancerDB
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  3. rs180902338[chr19:13141166]
Enhancers that have rs180902338[chr19:13141166]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13138760 13157647 enh17929
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs180902338[chr19:13141166]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13139783 13141220 TCF7L2 GTRD no Colon (HCT116) 21850170
chr19 13139783 13141220 TCF7L2 GTRD no Colon (HCT116) 108387483
chr19 13140536 13141171 TCF7L2 GTRD no Colon (HCT116) 21850174
chr19 13140536 13141171 TCF7L2 GTRD no Colon (HCT116) 108387487
chr19 13140722 13141374 CTCF UCSC Txn Factor no Conserved 108387488
chr19 13141162 13141174 POU2F1 JASPAR yes 112502573
chr19 13141164 13141172 FOXL1 JASPAR yes 112502574
chr19 13141164 13141175 FOXB1 JASPAR yes 112502575
Genes associated with rs180902338[chr19:13141166], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More