EnhancerDB
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  3. rs180902401[chr19:2544707]
Enhancers that have rs180902401[chr19:2544707]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2521384 2555115 enh4959
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs180902401[chr19:2544707]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2543148 2545171 TCF7L2 GTRD no Colon (HCT116) 21836768
chr19 2543148 2545171 TCF7L2 GTRD no Colon (HCT116) 108361876
chr19 2543148 2545171 TCF7L2 GTRD no Colon (HCT116) 108361877
chr19 2543160 2545653 ZNF274 GTRD no Blood (GM12878) 108361878
chr19 2543160 2545653 ZNF274 GTRD no Blood (GM12878) 108361879
chr19 2543160 2545653 ZNF274 GTRD no Blood (GM12878) 108361880
chr19 2543189 2544770 ZNF274 GTRD no Bone Marrow (K562) 21836780
chr19 2543189 2544770 ZNF274 GTRD no Bone Marrow (K562) 108361903
chr19 2543189 2544770 ZNF274 GTRD no Bone Marrow (K562) 108361904
chr19 2543215 2545558 ZNF274 GTRD no Blood (GM12878) 108361911
chr19 2543215 2545558 ZNF274 GTRD no Blood (GM12878) 108361912
chr19 2543231 2545646 ZNF274 GTRD no Blood (GM12878) 108361915
chr19 2543231 2545646 ZNF274 GTRD no Blood (GM12878) 108361916
chr19 2543231 2545646 ZNF274 GTRD no Blood (GM12878) 108361917
chr19 2543303 2546222 ZNF274 GTRD no Blood (GM12878) 108361965
chr19 2543303 2546222 ZNF274 GTRD no Blood (GM12878) 108361966
chr19 2543303 2546222 ZNF274 GTRD no Blood (GM12878) 108361967
chr19 2543339 2545657 ZNF274 GTRD no Blood (GM12878) 108361993
chr19 2543339 2545657 ZNF274 GTRD no Blood (GM12878) 108361994
chr19 2543339 2545657 ZNF274 GTRD no Blood (GM12878) 108361995
chr19 2543397 2544886 TCF7L2 GTRD no Colon (HCT116) 21836856
chr19 2543397 2544886 TCF7L2 GTRD no Colon (HCT116) 108362056
chr19 2543397 2544886 TCF7L2 GTRD no Colon (HCT116) 108362057
chr19 2544229 2545167 TCF7L2 GTRD no Colon (HCT116) 21837064
chr19 2544229 2545167 TCF7L2 GTRD no Colon (HCT116) 108362360
chr19 2544698 2544708 ALX3 JASPAR yes 112072405
chr19 2544698 2544708 EN2 JASPAR yes 112072406
chr19 2544698 2544708 ESX1 JASPAR yes 112072407
chr19 2544698 2544708 GBX2 JASPAR yes 112072408
chr19 2544698 2544708 GSX1 JASPAR yes 112072409
chr19 2544698 2544708 GSX2 JASPAR yes 112072410
chr19 2544698 2544708 LBX2 JASPAR yes 112072411
chr19 2544698 2544708 LHX2 JASPAR yes 112072412
chr19 2544698 2544718 RREB1 JASPAR yes 112072413
chr19 2544699 2544707 BARX1 JASPAR yes 112072414
chr19 2544699 2544707 BSX JASPAR yes 112072415
chr19 2544699 2544707 DLX6 JASPAR yes 112072416
chr19 2544699 2544707 ISX JASPAR yes 112072417
chr19 2544699 2544707 LBX1 JASPAR yes 112072418
chr19 2544699 2544707 LHX9 JASPAR yes 112072419
chr19 2544699 2544707 MSX1 JASPAR yes 112072420
chr19 2544699 2544707 MSX2 JASPAR yes 112072421
chr19 2544699 2544707 NKX6-2 JASPAR yes 112072422
chr19 2544699 2544707 PRRX1 JASPAR yes 112072423
chr19 2544699 2544707 RAX2 JASPAR yes 112072424
chr19 2544699 2544707 SHOX JASPAR yes 112072425
chr19 2544699 2544707 UNCX JASPAR yes 112072426
chr19 2544702 2544712 ZNF740 JASPAR yes 112072427
chr19 2544703 2544713 ZNF740 JASPAR yes 112072428
chr19 2544705 2544715 ZNF740 JASPAR yes 112072429
chr19 2544706 2544716 SP1 JASPAR yes 112072430
chr19 2544707 2544717 SP1 JASPAR yes 112072431
Genes associated with rs180902401[chr19:2544707], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More