EnhancerDB
  1. Home
  2. SNP
  3. rs182559678[chr17:34234684]
Enhancers that have rs182559678[chr17:34234684]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 34213485 34236135 enh17119
Skin (Keratinocyte) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Placenta Peripheral Blood (MM.1S) Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs182559678[chr17:34234684]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 34233908 34235052 SOX2 GTRD no Neural Stem Cells (H9) 21751126
chr17 34233967 34235051 SOX2 GTRD no Neural Stem Cells (H9) 21751127
chr17 34234077 34235044 SOX2 GTRD no Neural Stem Cells (H9) 21751130
chr17 34234128 34234725 SOX2 GTRD no Neural Stem Cells (H9) 21751131
chr17 34234679 34234690 TBX20 JASPAR yes 54021602
chr17 34234681 34234689 TBX5 JASPAR yes 54021603
Genes associated with rs182559678[chr17:34234684], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More